[INFO] cloning repository https://github.com/sounkou-bioinfo/phase_mnv_rs
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/sounkou-bioinfo/phase_mnv_rs" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fsounkou-bioinfo%2Fphase_mnv_rs", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fsounkou-bioinfo%2Fphase_mnv_rs'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] c55b5ce5431e4b74d151e6e0acaf820da41ae297
[INFO] fixing sounkou-bioinfo/phase_mnv_rs against try#622891a4e29178280638a6b63a8908bde2c0c854+cargoflags=-Zfix-edition=start=2015 for pr-157817-2
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fsounkou-bioinfo%2Fphase_mnv_rs" "/workspace/builds/worker-6-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-6-tc1/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/sounkou-bioinfo/phase_mnv_rs
[INFO] finished tweaking git repo https://github.com/sounkou-bioinfo/phase_mnv_rs
[INFO] tweaked toml for git repo https://github.com/sounkou-bioinfo/phase_mnv_rs written to /workspace/builds/worker-6-tc1/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/sounkou-bioinfo/phase_mnv_rs on toolchain 622891a4e29178280638a6b63a8908bde2c0c854
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+622891a4e29178280638a6b63a8908bde2c0c854" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/sounkou-bioinfo/phase_mnv_rs already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+622891a4e29178280638a6b63a8908bde2c0c854" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded linear-map v1.2.0
[INFO] [stderr]   Downloaded newtype_derive v0.1.6
[INFO] [stderr]   Downloaded fs-utils v1.1.4
[INFO] [stderr]   Downloaded rust-htslib v0.46.0
[INFO] [stderr]   Downloaded derive-new v0.5.9
[INFO] [stderr]   Downloaded bio-types v1.0.4
[INFO] [stderr]   Downloaded hts-sys v2.2.0
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/source:/opt/rustwide/workdir:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-m" "1610612736" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:3a6becf2bc8dde7f3fa57ede90e4f284e72d296796fc446bbb1e2c7cc0530151" "sleep" "infinity", kill_on_drop: false }`
[INFO] [stdout] 8d42eefafc76d06785976b21b7203e1668fa5a7293e55bd40f002afdf1e8adab
[INFO] running `Command { std: "docker" "start" "8d42eefafc76d06785976b21b7203e1668fa5a7293e55bd40f002afdf1e8adab", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-w" "/opt/rustwide/workdir" "--user" "0:0" "8d42eefafc76d06785976b21b7203e1668fa5a7293e55bd40f002afdf1e8adab" "/opt/rustwide/cargo-home/bin/cargo" "+622891a4e29178280638a6b63a8908bde2c0c854" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "8d42eefafc76d06785976b21b7203e1668fa5a7293e55bd40f002afdf1e8adab", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=" "-e" "RUSTDOCFLAGS=" "-w" "/opt/rustwide/workdir" "--user" "0:0" "8d42eefafc76d06785976b21b7203e1668fa5a7293e55bd40f002afdf1e8adab" "/opt/rustwide/cargo-home/bin/cargo" "+622891a4e29178280638a6b63a8908bde2c0c854" "fix" "--allow-no-vcs" "--allow-dirty" "--frozen" "--all" "--all-targets" "--message-format=json" "-Zfix-edition=start=2015", kill_on_drop: false }`
[INFO] [stderr]    Compiling libc v0.2.186
[INFO] [stderr]    Compiling glob v0.3.3
[INFO] [stderr]    Compiling prettyplease v0.2.37
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[INFO] [stderr]    Compiling bindgen v0.69.5
[INFO] [stderr]     Checking icu_normalizer v2.2.0
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[INFO] [stderr]    Compiling itertools v0.12.1
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[INFO] [stderr]    Compiling cmake v0.1.58
[INFO] [stderr]    Compiling libz-sys v1.1.28
[INFO] [stderr]    Compiling hts-sys v2.2.0
[INFO] [stderr]    Compiling derive-new v0.5.9
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[INFO] [stderr]     Checking bio-types v1.0.4
[INFO] [stderr]     Checking rust-htslib v0.46.0
[INFO] [stderr]    Compiling phase_tools-rs v0.1.0 (/opt/rustwide/workdir)
[INFO] [stdout] warning: associated function `new` is never used
[INFO] [stdout]  --> /opt/rustwide/target/debug/build/phase_tools-rs-f8af58653a8a20f5/out/fermi_lite_bindings.rs:3:247
[INFO] [stdout]   |
[INFO] [stdout] 3 | ...age : Storage , } impl < Storage > __BindgenBitfieldUnit < Storage > { # [inline] pub const fn new (storage : Storage) -> Self { S...
[INFO] [stdout]   |                      --------------------------------------------------                           ^^^
[INFO] [stdout]   |                      |
[INFO] [stdout]   |                      associated function in this implementation
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: methods `get_bit`, `set_bit`, `get`, and `set` are never used
[INFO] [stdout]  --> /opt/rustwide/target/debug/build/phase_tools-rs-f8af58653a8a20f5/out/fermi_lite_bindings.rs:3:422
[INFO] [stdout]   |
[INFO] [stdout] 3 | ... } impl < Storage > __BindgenBitfieldUnit < Storage > where Storage : AsRef < [u8] > + AsMut < [u8] >, { # [inline] pub fn get_bit (& self , index : usize) -> bool { debug_assert ! (index / 8 < self . storage . as_ref () . len ()) ; let byte_index = index / 8 ; let byte = self . storage . as_ref () [byte_index] ; let bit_index = if cfg ! (target_endian = "big") { 7 - (index % 8) } else { index % 8 } ; let mask = 1 << bit_index ; byte & mask == mask } # [inline] pub fn set_bit (& mut self , index : usize , val : bool) { debug_assert ! (index / 8 < self . storage . as_ref () . len ()) ; let byte_index = index / 8 ; let byte = & mut self . storage . as_mut () [byte_index] ; let bit_index = if cfg ! (target_endian = "big") { 7 - (index % 8) } else { index % 8 } ; let mask = 1 << bit_index ; if val { * byte |= mask ; } else { * byte &= ! mask ; } } # [inline] pub fn get (& self , bit_offset : usize , bit_width : u8) -> u64 { debug_assert ! (bit_width <= 64) ; debug_assert ! (bit_offset / 8 < self . storage . as_ref () . len ()) ; debug_assert ! ((bit_offset + (bit_width as usize)) / 8 <= self . storage . as_ref () . len ()) ; let mut val = 0 ; for i in 0 .. (bit_width as usize) { if self . get_bit (i + bit_offset) { let index = if cfg ! (target_endian = "big") { bit_width as usize - 1 - i } else { i } ; val |= 1 << index ; } } val } # [inline] pub fn set (&...
[INFO] [stdout]   |       ---------------------------------------------------------------------------------------------------                     ^^^^^^^                                                                                                                                                                                                                                                                                                                                                       ^^^^^^^                                                                                                                                                                                                                                                                                                                                                                                                          ^^^                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ^^^
[INFO] [stdout]   |       |
[INFO] [stdout]   |       methods in this implementation
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: multiple associated items are never used
[INFO] [stdout]  --> /opt/rustwide/target/debug/build/phase_tools-rs-f8af58653a8a20f5/out/fermi_lite_bindings.rs:3:9957
[INFO] [stdout]   |
[INFO] [stdout] 3 | ... } impl fml_ovlp_t { # [inline] pub fn len (& self) -> u32 { unsafe { :: std :: mem :: transmute (self . _bitfield_1 . get (0usize , 31u8) as u32) } } # [inline] pub fn set_len (& mut self , val : u32) { unsafe { let val : u32 = :: std :: mem :: transmute (val) ; self . _bitfield_1 . set (0usize , 31u8 , val as u64) } } # [inline] pub fn from (& self) -> u32 { unsafe { :: std :: mem :: transmute (self . _bitfield_1 . get (31usize , 1u8) as u32) } } # [inline] pub fn set_from (& mut self , val : u32) { unsafe { let val : u32 = :: std :: mem :: transmute (val) ; self . _bitfield_1 . set (31usize , 1u8 , val as u64) } } # [inline] pub fn id (& self) -> u32 { unsafe { :: std :: mem :: transmute (self . _bitfield_1 . get (32usize , 31u8) as u32) } } # [inline] pub fn set_id (& mut self , val : u32) { unsafe { let val : u32 = :: std :: mem :: transmute (val) ; self . _bitfield_1 . set (32usize , 31u8 , val as u64) } } # [inline] pub fn to (& self) -> u32 { unsafe { :: std :: mem :: transmute (self . _bitfield_1 . get (63usize , 1u8) as u32) } } # [inline] pub fn set_to (& mut self , val : u32) { unsafe { let val : u32 = :: std :: mem :: transmute (val) ; self . _bitfield_1 . set (63usize , 1u8 , val as u64) } } # [inline] pub fn new_bitfield_1 (l...
[INFO] [stdout]   |       ---------------                     ^^^                                                                                                                               ^^^^^^^                                                                                                                                                                    ^^^^                                                                                                                               ^^^^^^^^                                                                                                                                                                    ^^                                                                                                                                ^^^^^^                                                                                                                                                                     ^^                                                                                                                               ^^^^^^                                                                                                                                                                    ^^^^^^^^^^^^^^
[INFO] [stdout]   |       |
[INFO] [stdout]   |       associated items in this implementation
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: associated function `new` is never used
[INFO] [stdout]  --> /opt/rustwide/target/debug/build/phase_tools-rs-f8af58653a8a20f5/out/fermi_lite_bindings.rs:3:247
[INFO] [stdout]   |
[INFO] [stdout] 3 | ...age : Storage , } impl < Storage > __BindgenBitfieldUnit < Storage > { # [inline] pub const fn new (storage : Storage) -> Self { S...
[INFO] [stdout]   |                      --------------------------------------------------                           ^^^
[INFO] [stdout]   |                      |
[INFO] [stdout]   |                      associated function in this implementation
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: methods `get_bit`, `set_bit`, `get`, and `set` are never used
[INFO] [stdout]  --> /opt/rustwide/target/debug/build/phase_tools-rs-f8af58653a8a20f5/out/fermi_lite_bindings.rs:3:422
[INFO] [stdout]   |
[INFO] [stdout] 3 | ... } impl < Storage > __BindgenBitfieldUnit < Storage > where Storage : AsRef < [u8] > + AsMut < [u8] >, { # [inline] pub fn get_bit (& self , index : usize) -> bool { debug_assert ! (index / 8 < self . storage . as_ref () . len ()) ; let byte_index = index / 8 ; let byte = self . storage . as_ref () [byte_index] ; let bit_index = if cfg ! (target_endian = "big") { 7 - (index % 8) } else { index % 8 } ; let mask = 1 << bit_index ; byte & mask == mask } # [inline] pub fn set_bit (& mut self , index : usize , val : bool) { debug_assert ! (index / 8 < self . storage . as_ref () . len ()) ; let byte_index = index / 8 ; let byte = & mut self . storage . as_mut () [byte_index] ; let bit_index = if cfg ! (target_endian = "big") { 7 - (index % 8) } else { index % 8 } ; let mask = 1 << bit_index ; if val { * byte |= mask ; } else { * byte &= ! mask ; } } # [inline] pub fn get (& self , bit_offset : usize , bit_width : u8) -> u64 { debug_assert ! (bit_width <= 64) ; debug_assert ! (bit_offset / 8 < self . storage . as_ref () . len ()) ; debug_assert ! ((bit_offset + (bit_width as usize)) / 8 <= self . storage . as_ref () . len ()) ; let mut val = 0 ; for i in 0 .. (bit_width as usize) { if self . get_bit (i + bit_offset) { let index = if cfg ! (target_endian = "big") { bit_width as usize - 1 - i } else { i } ; val |= 1 << index ; } } val } # [inline] pub fn set (&...
[INFO] [stdout]   |       ---------------------------------------------------------------------------------------------------                     ^^^^^^^                                                                                                                                                                                                                                                                                                                                                       ^^^^^^^                                                                                                                                                                                                                                                                                                                                                                                                          ^^^                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ^^^
[INFO] [stdout]   |       |
[INFO] [stdout]   |       methods in this implementation
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: multiple associated items are never used
[INFO] [stdout]  --> /opt/rustwide/target/debug/build/phase_tools-rs-f8af58653a8a20f5/out/fermi_lite_bindings.rs:3:9957
[INFO] [stdout]   |
[INFO] [stdout] 3 | ... } impl fml_ovlp_t { # [inline] pub fn len (& self) -> u32 { unsafe { :: std :: mem :: transmute (self . _bitfield_1 . get (0usize , 31u8) as u32) } } # [inline] pub fn set_len (& mut self , val : u32) { unsafe { let val : u32 = :: std :: mem :: transmute (val) ; self . _bitfield_1 . set (0usize , 31u8 , val as u64) } } # [inline] pub fn from (& self) -> u32 { unsafe { :: std :: mem :: transmute (self . _bitfield_1 . get (31usize , 1u8) as u32) } } # [inline] pub fn set_from (& mut self , val : u32) { unsafe { let val : u32 = :: std :: mem :: transmute (val) ; self . _bitfield_1 . set (31usize , 1u8 , val as u64) } } # [inline] pub fn id (& self) -> u32 { unsafe { :: std :: mem :: transmute (self . _bitfield_1 . get (32usize , 31u8) as u32) } } # [inline] pub fn set_id (& mut self , val : u32) { unsafe { let val : u32 = :: std :: mem :: transmute (val) ; self . _bitfield_1 . set (32usize , 31u8 , val as u64) } } # [inline] pub fn to (& self) -> u32 { unsafe { :: std :: mem :: transmute (self . _bitfield_1 . get (63usize , 1u8) as u32) } } # [inline] pub fn set_to (& mut self , val : u32) { unsafe { let val : u32 = :: std :: mem :: transmute (val) ; self . _bitfield_1 . set (63usize , 1u8 , val as u64) } } # [inline] pub fn new_bitfield_1 (l...
[INFO] [stdout]   |       ---------------                     ^^^                                                                                                                               ^^^^^^^                                                                                                                                                                    ^^^^                                                                                                                               ^^^^^^^^                                                                                                                                                                    ^^                                                                                                                                ^^^^^^                                                                                                                                                                     ^^                                                                                                                               ^^^^^^                                                                                                                                                                    ^^^^^^^^^^^^^^
[INFO] [stdout]   |       |
[INFO] [stdout]   |       associated items in this implementation
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 32.94s
[INFO] [stderr] crater-edition-check: all finished
[INFO] running `Command { std: "docker" "inspect" "8d42eefafc76d06785976b21b7203e1668fa5a7293e55bd40f002afdf1e8adab", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "8d42eefafc76d06785976b21b7203e1668fa5a7293e55bd40f002afdf1e8adab", kill_on_drop: false }`
[INFO] [stdout] 8d42eefafc76d06785976b21b7203e1668fa5a7293e55bd40f002afdf1e8adab
